| Title |
Journal |
Year |
| Epigenetic factors Polycomb (Pc) and Suppressor of zeste (Su(z)2) negatively regulate longevity in Drosophila melanogaster.
| Biogerontology.
| 2018 |
| Distinguishing States of Arrest: Genome-Wide Descriptions of Cellular Quiescence Using ChIP-Seq and RNA-Seq Analysis.
| Methods Mol Biol. | 2018 |
| Epigenomic and genomic landscape of Drosophila melanogaster heterochromatic genes.
| Genomics. | 2018 |
| MSDB:A Comperhensive Database of Simple Sequence Repeats
| Genome Biol Evol
| 2017 |
| Simple Sequence repeats showing "length preference have regulatory functions in humans."
| Gene
| 2017 |
| Ultraconserved sequences associated with HoxD cluster have strong repression activity.
| Genome Biol Evol
| 2017 |
| O-GlcNAcylation of Boundary melanogaster correlates with active histone marks at the promoters of its target genes
| Nucleus
| 2017 |
| C-State: An interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search
| BMC Bioinformatics
| 2017 |
| Vertebrate GAF/ThPOK: emerging functions in chromatin architecture and transcriptional regulation.
| Cell Mol Life Sci. 2017 Aug 30.
| 2017 |
| Long Noncoding RNAs in Mammalian Development and Diseases.
| Adv Exp Med Biol. 2017;1008:155-198. doi: 10.1007/978-981-10-5203-3_6.
| 2017 |
| The placental gateway of maternal transgenerational epigenetic inheritance.
| J Genet. 2017 Jul;96(3):465-482.
| 2017 |
| PERF: An Exhaustive Algorithm for Ultra-Fast and Efficient Identification of Microsatellites from Large DNA Sequences.
| Bioinformatics
| 2017 |
| DNMT3L enables accumulation and inheritance of epimutations in transgenic Drosophila.
| SCIENTIFIC REPORTS, 6: 19572. | 2016 |
| Finding clues to the riddle of sex determination in zebrafish.
| JOURNAL OF BIOSCIENCES, 41: 145-155. | 2016 |
| Drosophila as a model for mosquito: olfactory signals and host seeking behavior.
| CURRENT SCIENCE, 110: 44-46. | 2016 |
| Reversible loss of reproductive fitness in zebrafish on chronic alcohol exposure.
| Alcohol, Vol. 50, p83-89 | 2015 |
| Expansion of the polycomb system and evolution of complexity.
| Mech Dev. 2015 Nov;138 Pt 2:97-112
| 2015 |
| Specific combinations of boundary element and Polycomb response element are required for the regulation of the Hox genes in Drosophila melanogaster.
| Mech Dev.2015 Nov; 138 Pt 2:141-50
| 2015 |
| Epigenetic mechanisms and boundaries in the regulation of mammalian Hox clusters. | Mech Dev. 2015 Nov;138 Pt 2:160-9
| 2015 |
| The functional diversity of Drosophila Ino80 in development
| Mech Dev. 2015 Nov;138 Pt 2:113-21
| 2015 |
| A fine balance: epigenetic control of cellular quiescence by the tumor suppressor PRDM2/RIZ at a bivalent domain in the cyclin a gene.
| Nucleic Acids Res 2015 Jul 27;43(13):6236-56 | 2015 |
| Design and synthesis of pyrazole-oxindole conjugates targeting tubulin polymerization as new anticancer agents.
| European Journal of Medicinal Chemistry
| 2015 |
| Code in the Non-Coding
| Proc Indian Natn Sci Acad
| 2015 |
| A fine balance: epigenetic control of cellular quiescence by the tumor suppressor | Nucleic Acids Res. 2015 Jun 3. pii: gkv567.
| 2015 |
| Drosophila Rif1 is an essential gene and controls late developmental events by | Sci Rep. 2015 May 29;5:10679
| 2015 |
| MoD Special issue on "Upstream and Downstream of Hox Genes". | MECHANISMS OF DEVELOPMENT, 138: 63-63.
| 2015 |
| High-wire act: the poised genome and cellular memory.
| FEBS J. 2014 Dec 1
| 2014 |
| Restraining the enhancers from straying.
| J Biosci. 2014 Dec;39(5):739-40.
| 2014 |
| Genome-wide mapping of matrix attachment regions in Drosophila melanogaster.
| BMC Genomics. 2014 Nov 25;15:1022.
| 2014 |
| CARM1 regulates astroglial lineage through transcriptional regulation of Nanog | Mol Biol Cell. 2015 Jan 15;26(2):316-26.
| 2014 |
| Role of abd-A and Abd-B in development of abdominal epithelia breaks posterior | PLoS Genet. 2014 Oct 23;10(10):e1004717.
| 2014 |
| Length and sequence dependent accumulation of simple sequence repeats in | Gene. 2014 Nov 10;551(2):167-75. | 2014 |
| Mining the cis-regulatory elements of Hox clusters.
| Methods Mol Biol. 2014;1196:121-31.
| 2014 |
| Transposable element `roo` attaches to nuclear matrix of the Drosophila | J Insect Sci. 2013;13:111.
| 2014 |
| Emerging trends of long non-coding RNAs in gene activation.
| FEBS J. 2014 Jan;281(1):34-45.
| 2013 |
| A functionally conserved Polycomb response element from mouse HoxD complex | Sci Rep. 2013 Oct 22;3:3011.
| 2013 |
| GATA simple sequence repeats function as enhancer blocker boundaries.
| Nat Commun. 2013;4:1844
| 2013 |
| Vertebrate GAGA factor associated insulator elements demarcate homeotic genes in | Epigenetics Chromatin. 2013 Apr 22;6(1):8.
| 2013 |
| AAGAG repeat RNA is an essential component of nuclear matrix in Drosophila.
| RNA Biol. 2013 Apr;10(4):564-71.
| 2013 |
| Functional sub-division of the Drosophila genome via chromatin looping: the | Nucleus. 2013 Mar-Apr;4(2):115-22.
| 2013 |
| Conserved boundary elements from the Hox complex of mosquito, Anopheles gambiae. | Nucleic Acids Res. 2012 Dec 4. [Epub ahead of print] | 2012 |
| Homeotic gene regulation: a paradigm for epigenetic mechanisms underlying organismal development. | Subcellular Biochemistry, Volume 61, 177-207, 2013 | 2012 |
| Functional diversification of yeast telomere associated protein, Rif1, in higher eukaryotes. | BMC Genomics. 2012 Jun 19; 13(1):255. | 2012 |
| Chromatin domain boundary element search tool for Drosophila. | Nucleic Acids Res. 40 (10), 4385-4395, 2012 | 2012 |
| A BEAF dependent chromatin domain boundary separates myoglianin and eyeless genes of Drosophila melanogaster | Nucleic Acids Res. 39, 3543-57, 2011 | 2011 |
| Epigenetic profile of the euchromatic region of human Y chromosome | Nucleic Acids Res. 39, 3594-606, 2011 | 2011 |
| Tone up your chromatin and stay young | J. Biosci. 36(1), 5-11, 2011 | 2011 |
| Dynamics of Nuclear Matrix Proteome during Embryonic Development in Drosophila melanogaster | J. Biosci. 36 (3), 439-459, 2011 | 2011 |
| Repeat performance: how do genome packaging and regulation depend on simple sequence repeats? | BioEssays 32, 165-174, 2010. | 2010 |
| Regulation of cellular chromatin state: insight from quiescence and differentiation | Organogenesis 6, 37-47, 2010. | 2010 |
| Chromatin remodeling protein INO80 influences expression of homeotic genes in Drosophila. | Genes Cells 15, 725-735, 2010. | 2010 |
| The paternal hidden agenda: Epigenetic inheritance through sperm chromatin. | Epigenetics 5, 1-6, 2010. | 2010 |
| Vertebrate homologue of Drosophila GAGA factor. | J. Mol. Biol. 400, 437-447, 2010. | 2010 |
| Nuclear matrix proteome analysis of Drosophila melanogaster. | Mol. & Cell. Proteomics 9, 2005-2018, 2010 | 2010 |
| A functionally conserved boundary element from the mouse HoxD locus requires GAGA factor in Drosophila | Development 137, 4239-47, 2010 | 2010 |
| RISCI - Repeat Induced Sequence Changes Identifier: a comprehensive, comparative genomics-based, in silico subtractive hybridization pipeline to identify repeat induced sequence changes in closely related genomes | BMC Bioinformatics. 26, 609, 2010 | 2010 |
| Chromosomes to Genome (book). | I.K. International Publishing House, New Delhi (ISBN: 978-93-80026-21-3), 2009, 222 pages. | 2009 |
| Genome to Epigenome (book chapter). | In Chromosomes to Genome, Rakesh K. Mishra (Editor), I.K. International Publishing House, New Delhi (ISBN: 978-93-80026-21-3), pp. 31-39, 2009. | 2009 |
| Polycomb Group of Genes and the Epigenetics of Aging (book chapter). | Epigenetics of Aging, Tollefsbol, Trygve O. (Ed.) Springer (ISBN: 978-1-4419-0638-0), pp. 135-150, 2009. | 2009 |
| Differentiation to Dedifferentiation: Induced pluripotent stem cells (book chapter). | Recent Trends in Biotechnology, M P Singh (ed.), Nova Science Publishers), New York (ISBN: 978-1-60876-148-7, 2009 | 2009 |
| Divide and (epigenetic) rule: Chromatin Domains as Functional and Structural Units of Genomes (book chapter). | Current Trends in Science. INSA Platinum Jubilee Special Publication (ISBN: 978-81-85324-16-6), pp. 211-224, 2009 | 2009 |
| Chromatin and Disease (Book Review) | Current Science 97, 261-262, 2009. | 2009 |
| SnS-Align: A graphic tool for alignment of distantly related proteins. | International Journal of Bioinformatics Research & Applications (IJBRA) 5, 663-673, 2009. | 2009 |
| Cytogenetic characterization and fluorescence in situ hybridization of (GATA)10 repeats on established primary cell cultures from Indian water snake (Natrix piscator) and Indian mugger (Crocodylus palustris) embryos. | Cytogenet Genome Res. 127, 287-96, 2009. | 2009 |
| Novel motifs distinguish multiple homologues of Polycomb in vertebrates: expansion and diversification of the epigenetic toolkit | BMC Genomics 10, 549, 2009. | 2009 |
| Reptin and Pontin antagonistically function with PcG and TrxG complexes to mediate Hox gene control | EMBO Reports 9, 260-266, 2008. | 2008 |
| Transcriptional activation by GAGA factor is through its direct interaction with dmTAF3 | Dev. Biol. 317, 660-670, 2008. | 2008 |
| Epigenetic regulation of genes during development: A conserved theme from flies to mammals | J. Genet. Genomics 35, 413-429, 2008. | 2008 |
| An intronic DNA sequence within the mouse Neuronatin gene exhibits biochemical characteristics of an ICR and acts as a transcriptional activator in Drosophila | Mechanisms of Development 125, 963-973, 2008. | 2008 |
| A double-edged sword to force posterior dominance of Hox genes | BioEssays 30, 1058-1061, 2008. | 2008 |
| Boundary Element-Associated Factor 32B Connects Chromatin Domains to the Nuclear Matrix | Mol. Cell. Biol. 27, 4796-4806, 2007. | 2007 |
| Involvement of Polycomb-Group Genes in Establishing HoxD Temporal Colinearity | Genesis 45, 570-576, 2007. | 2007 |
| Chromatin Domain Boundaries: Defining the functional domains in genome | Proc. Ind. Natl. Sci. Acad. 73, 239-253, 2007. | 2007 |
| Efficient and specific targeting of Polycomb group proteins requires cooperative interaction between grainyhead and pleohomeotic | Mol. Cell. Biol. 26, 1434-1444, 2006. | 2006 |
| MiRacles in Hox gene regulation | BioEssays 28, 445-448, 2006. | 2006 |
| To SIR with Polycomb: linking silencing mechanisms | BioEssays 27, 119-121, 2005 | 2005 |
| Synergistic recognition of an epigenetic DNA element by Pleiohomeotic and a Polycomb core complex | Genes & Development 19, 1755-1760, 2005. | 2005 |
| Bioinformatics and the Art of Sequence Analysis | Recent Advances in Biotechnology (N C Gautam and M P Singh, eds), Shree Publishers, New Delhi, PP. 21-41, 2004 | 2004 |
| The enhancer blocking activity of the Fab-7 boundary from the Drosophila bithorax complex requires GAGA factor binding sites | Genetics 168, 1371-1384, 2004. | 2004 |
| Edward B Lewis (1918-2004) (Commentary) | J. Biosciences 29, 231-233, 2004 | 2004 |
| Bridging the gap but breaking the rule: a tunicate twists the hox puzzle (Research News) | Current Science 87, 1038-1040, 2004 | 2004 |
| Extreme conservation of noncoding DNA near HoxD complex of vertebrates | BMC Genomics, 5, 75, 2004 | 2004 |
| Triplet repeats in human genome: distribution and their association with genes and other genomic regions (Discovery Note) | Bioinformatics 19, 549-552, 2003 | 2003 |
| Genome-Wide Analysis of Microsatellite Repeats in Humans: Their Abundance and Density in Specific Genomic Regions | Genome Biology 4, R13, 2003. | 2003 |
| Extreme Conservation of Non-Repetitive Non-Coding Regions Near HoxD Complex of Vertebrates (Deposited research article) | Genome Biology 4, P2, 2003. | 2003 |
| Genome-Wide Analysis of Bkm Sequences (GATA repeats): Predominant Association with Sex Chromosomes and Potential Role in Higher Order Chromatin Organization and Function | Bioinformatics 19, 681-685, 2003. | 2003 |
| Trl-GAGA Directly Interacts with lola like and Both are Part of the Repressive Complex of Polycomb Group of Genes | Mechanisms of Development 120, 681-689, 2003. | 2003 |
| MRD: a microsatellite repeats database for prokaryotic and eukaryotic genomes (Deposited research article) | Genome Biology 2002, 3(12):preprint0011.1-0011.13 | 2002 |
| The iab-7 Polycomb Response Element Maps to a Nucleosome-Free Region of Chromatin and Requires Both GAGA and Pleiohomeotic for Silencing Activity | Mol. Cell. Biol. 21, 1311-1318, 2001. | 2001 |
| Getting at the core of the colinearity of Hox genes. | Current Science 77, 213-216, 1999. | 1999 |
| Boundaries that demarcate structural and functional domains of chromatin. | J. Biosciences 24, 377-399, 1999. | 1999 |
| Synthesis of a novel polynucleotide : potential R-L model. | Current Science 57, 574-577, 1988. | 1998 |
| Chromatin domain boundaries in the Bithorax complex | Cell. Mol. Life Sci. 54, 60-70, 1998. | 1998 |
| Selective inhibition of cell-free translation by oligonucleotides targeted to an mRNA hairpin structure. | Nucleic Acids Research 26, 2273-2278, 1998 | 1998 |
| A conserved sequence motif in Polycomb-Response Elements. | Molecular Cell 1, 1065-1066, 1998. | 1998 |
| Three small nucleolar RNAs that are involved in ribosomal RNA precursor processing. | Proc. Natl. Acad. Sci. (USA) 94, 4972-4977, 1997. | 1997 |
| Identification of aptamers against the DNA template for in vitro transcription of the HIV-1 TAR element. | Antisense Nucleic Acid Drug Development 7, 369-380, 1997. | 1997 |
| Targeting nucleic acid secondary structure by antisense oligonucleotides designed through in vitro selection. | Proc. Natl. Acad. Sci. (USA) 93, 10679-10684, 1996. | 1996 |
| Improved leishmanicidal effect of phosphorothioate antisense oligonucleotides by LDL-mediated delivery. | Biochim. Biophys. Acta 1264, 229-237, 1995. | 1995 |
| Differential influence of DNA supercoiling on in vivo strength of promoters varying in structure and organisation in E. coli. | FEBS Letters 340, 189-192, 1994. | 1994 |
| DNA intercalation and photoinduced cleavage by 4-nitro- (N hexylamine)1,8-Naphthalimide. | Nucleotides & Nucleotides 13, 963-978, 1994. | 1994 |
| Antisense phosphorothioate oligonucleotides : selective killing of the intracellular parasite Leishmania amazonensis. | Proc. Natl. Acad. Sci. (USA) 91, 7859-7863, 1994. | 1994 |
| Design of simple and flexible dimeric peptide model for DNA recognition and scission. | J. Chem. Soc. (Chemical Communications) 5, 107-109, 1994. | 1994 |
| In vitro selection of antisense oligonucleotides targeted to a hairpin structure. | C. R. Acad. Sci.(Paris) 317, 977-982, 1994. | 1994 |
| Synthetic nucleases crafted from L-lysine. | Proc. Indian Acad. Sci., Chem. Sci. 106, 1071-1088, 1994. | 1994 |
| Inheritance of chromatin structure: DNA methylation and other means. (Research news) | Current Science 64, 212-214, 1993. | 1993 |
| Promoter search and strength of a promoter: two important means for global regulation of gene expression in E. coli. | J. Biosciences 18, 1-11, 1993. | 1993 |
| Design of a chemical nuclease model with (lys)2 Cu as the core motif. | J Chem. Soc. (Chemical Communications) 4, 337-339, 1993. | 1993 |
| Mechanism of initiation of transcription by E. coli RNA polymerase on supercoiled template. | Molecular Microbiology 8, 507-515, 1993. | 1993 |
| Self-association properties of naphthalimide derived fluorescent DNA intercalators. | Indian J. Chemistry 32B, 540-545, 1993. | 1993 |
| Promoter recognition and transcription efficiency in E. coli: influence of DNA conformation and topology. | Proceedings of DAE Symposium on Molecular Biology of Microorganisms, p. 120-125, 1992. | 1992 |
| Photoinduced strand scission of double helical DNA by 1,8-Naphthalimide derived intercalators. | Current Science 62, 693-695, 1992. | 1992 |
| Yeast budding forages through redundancy. (Scientific correspondence) | Current Science 63, 111-112, 1992. | 1992 |
| Screening of clones containing altered DNA conformations by plasmid topoprofile shift. | J. Biochem. Biophys. Meth. 22, 171-175, 1991. | 1991 |
| Mechanism of initiation of transcription in Escherichia coli. | Nucleotides & Nucleotides 10, 607-608, 1991. | 1991 |
| Sequence specific chemical recognition of DNA. | Nucleotides & Nucleotides 10, 609-612, 1991. | 1991 |
| Unusual DNA structures: sequence requirements and role in transcriptional control. | Structure & Methods Vol. 2: DNA Protein Complexes & Proteins (Sharma, R H & Sharma, M H, Eds.), Adenine Press, N.Y., p. 33-49, 1990. | 1990 |
| Correlation between the DNA supercoiling and the initiation of transcription of E. coli RNA polymerase in vitro : role of the sequences upstream of the promoter regions. | FEBS Letters 260, 273-276, 1990. | 1990 |
| Sequence criteria for Z-DNA formation: studies on poly d(ACGT). | Nucleic Acids Research 17, 450, 1989. | 1989 |
| DNA duplex with the potential to change handedness after every half a turn. | Nucleic Acids Research 17, 7273-7281, 1989. | 1989 |
| Use of protecting groups as purification tool in large scale synthesis of small deoxyoligonucleotides. | Indian J. Chemistry 27B, 817-820, 1988. | 1988 |
| Interruptions of (CG)n sequences by GG, TG and CA need not prevent B to Z transition in solution. | Nucleic Acids Research 16, 4651-4665, 1988. | 1988 |
| Sequence specificity of Z-DNA formation in oligonucleotides. | Biochemistry International 17, 121-13, 1988. | 1988 |
| Improved synthesis of oligodeoxynucleotides using 3-methoxy-4 phenoxy benzoyl group for amino protection. | Nucleic Acids Research 14, 6197-6112, 1986. | 1986 |
