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Publications
From 2008-till date

Single Amino Acid Repeats in the Proteome World: Structural, Functional, and Evolutionary Insights.
Kumar AS, Sowpati DT, Mishra RK
PLOS ONE 11(11): e0166854. 2016 Nov 28. doi: 10.1371/journal.pone.0166854 [View]

Finding clues to the riddle of sex determination in zebrafish.
Nagabhushana A, Mishra RK
J Biosci. 2016 Mar;41(1):145-55 [PubMed]

Reversible loss of reproductive fitness in zebrafish on chronic alcohol exposure
Pooran Singh Dewari, Funmilola Ajani, Gopal Kushawah, Damera Santhosh Kumar, Rakesh K. Mishra
Alcohol Journal. 2015 Dec 18. doi:10.1016/j.alcohol.2015.11.006 [View]

Expansion of the polycomb system and evolution of complexity.
Sowpati DT, Senthilkumar R, Mishra RK.
Mech Dev. 2015 Aug 7. pii: S0925-4773(15)30014-9. doi: 10.1016/j.mod.2015.07.013. [PubMed]

Specific combinations of boundary element and Polycomb response element are required for the regulation of the Hox genes in Drosophila melanogaster.
Singh NP, Mishra RK.
Mech Dev. 2015 Aug 5. pii: S0925-4773(15)30017-4. doi: 10.1016/j.mod.2015.07.016. [PubMed]

Epigenetic mechanisms and boundaries in the regulation of mammalian Hox clusters.
Srivastava S, Dhawan J, Mishra RK.
Mech Dev. 2015 Aug 6. pii: S0925-4773(15)30016-2. doi: 10.1016/j.mod.2015.07.015. [PubMed]

The functional diversity of Drosophila Ino80 in development.
Ghasemi M, Pawar H, Mishra RK, Brahmachari V.
Mech Dev. 2015 Aug 4. pii: S0925-4773(15)30015-0. doi: 10.1016/j.mod.2015.07.014 [PubMed]

A fine balance: epigenetic control of cellular quiescence by the tumor suppressor PRDM2/RIZ at a bivalent domain in the cyclin a gene.
Cheedipudi S, Puri D, Saleh A, Gala HP, Rumman M, Pillai MS, Sreenivas P, Arora R, Sellathurai J, Schroder HD, Mishra RK, Dhawan J.
Nucleic Acids Res. 2015 Jul 27;43(13):6236-56. doi: 10.1093/nar/gkv567. Epub 2015 Jun 3. [PubMed]

Code in the Non-Coding.
Jaya Krishnan, Rakesh K Mishra.
Proceedings of Indian National Science Academy. 2015 Jun.

A fine balance: epigenetic control of cellular quiescence by the tumor suppressor PRDM2/RIZ at a bivalent domain in the cyclin a gene.
Cheedipudi S, Puri D, Saleh A, Gala HP, Rumman M, Pillai MS, Sreenivas P, Arora R, Sellathurai J, Schroeder HD, Mishra RK, Dhawan J.
Nucleic Acids Res. 2015 Jun 3. pii: gkv567. [PubMed]

Drosophila Rif1 is an essential gene and controls late developmental events by direct interaction with PP1-87B.
Sreesankar E, Bharathi V, Mishra RK, Mishra K.
Sci Rep. 2015 May 29;5:10679. doi: 10.1038/srep10679. [PubMed]

CARM1 regulates astroglial lineage through transcriptional regulation of Nanog and posttranscriptional regulation by miR92a.
Selvi BR, Swaminathan A, Maheshwari U, Nagabhushana A, Mishra R K, Kundu TK.
Mol Biol Cell. 2015 Jan 15;26(2):316-26. doi: 10.1091/mbc.E14-01-0019. Epub 2014 Nov 12. [PubMed]

Restraining the enhancers from straying.
Mishra R K.
J Biosci. 2014 Dec;39(5):739-40. [PubMed]

High-wire act: the poised genome and cellular memory.
Puri D, Gala H, Mishra R, Dhawan J.
FEBS J. 2014 Dec 1. doi: 10.1111/febs.13165. [PubMed]

Genome-wide mapping of matrix attachment regions in Drosophila melanogaster.
Pathak RU, Srinivasan A, Mishra R K.
BMC Genomics. 2014 Nov 25;15:1022. doi: 10.1186/1471-2164-15-1022. [PubMed]

Length and sequence dependent accumulation of simple sequence repeats in vertebrates: Potential role in genome organization and regulation.
Ramamoorthy S, Garapati HS, Rakesh K Mishra.
Gene. 2014 Nov 10;551(2):167-75. doi: 10.1016/j.gene.2014.08.052. Epub 2014 Aug 27. [PubMed ]

Role of abd-A and Abd-B in Development of Abdominal Epithelia Breaks Posterior Prevalence Rule.
Singh NP, Rakesh K Mishra.
PLoS Genet. 2014 Oct 23;10(10):e1004717. doi: 10.1371/journal.pgen.1004717. eCollection 2014 Oct. [PubMed ]

Mining the cis-regulatory elements of Hox clusters.
Matharu NK, Rakesh K Mishra.
Methods Mol Biol. 2014;1196:121-31. doi: 10.1007/978-1-4939-1242-1_8. [PubMed ]

Emerging trends of long non-coding RNAs in gene activation.
Krishnan J, Rakesh K Mishra.
FEBS J. 2014 Jan;281(1):34-45. doi: 10.1111/febs.12578. Epub 2013 Nov 13. Review. [PubMed ]

Transposable element 'roo' attaches to nuclear matrix of the Drosophila melanogaster.
Mamillapalli A, Pathak RU, Garapati HS, Rakesh K Mishra.
J Insect Sci. 2013;13:111. doi: 10.1673/031.013.11101. [PubMed ]

A functionally conserved Polycomb response element from mouse HoxD complex responds to heterochromatin factors.
Vasanthi D, Nagabhushan A, Matharu NK, Rakesh K Mishra.
Sci Rep. 2013 Oct 22;3:3011. doi: 10.1038/srep03011. [PubMed ]

Ram P. Kumar, Jaya Krishnan, Narendra Pratap Singh, Lalji Singh and Rakesh K Mishra.
GATA simple sequence repeats function as enhancer blocker boundaries.
Nat Commun. 4:1844, 2013 [PubMed ] [Full Text]

Surabhi Srivastava, Deepika Puri, Hita S Garapati, Jyotsna Dhawan and Rakesh K Mishra.
Vertebrate GAGA factor associated insulator elements demarcate homeotic genes in the HOX clusters.
Epigenetics & Chromatin, 6:8, 2013 [PubMed ] [FREE Full Text]

Rashmi U. Pathak, Anitha Mamillapalli, Nandini Rangaraj, Ram P. Kumar, Dasari Vasanthi, Krishnaveni Mishra and Rakesh K Mishra.
AAGAG repeat RNA is an essential component of nuclear matrix in Drosophila.
RNA Biol. 10 (4), 536-543,2013 [PubMed ] [Full Text]

Sajad H. Ahanger, Yogesh S. Shouche and Rakesh K Mishra.
Functional sub-division of the Drosophila genome via chromatin looping: the emerging importance of CP190.
Nucleus, 4 (2), 115-122, 2013 [PubMed ] [Full Text]

Sajad H. Ahanger, Arumugam Srinivasan, Dasari Vasanthi, Yogesh S. Shouche and Rakesh K Mishra.
Conserved boundary elements from the Hox complex of mosquito, Anopheles gambiae.
Nucleic Acids Res. 41 (2), 804-816, 2013 [PubMed ] [FREE Full Text]

Navneet K. Matharu, Vasanthi Dasari and Rakesh K Mishra.
Homeotic gene regulation: a paradigm for epigenetic mechanisms underlying organismal development.
Subcellular Biochemistry, Volume 61, 177-207, 2013 [PubMed] [FREE Full Text]

Easwaran Sreesankar, Ramamoorthy Senthilkumar, Vellaichamy Bharathi, Rakesh K Mishra and Krishnaveni Mishra.
Functional diversification of yeast telomere associated protein, Rif1, in higher eukaryotes.
BMC Genomics. 13(1):255, 2012 [PubMed ] [FREE Full Text]

Arumugam Srinivasan and Rakesh K Mishra.
Chromatin domain boundary element search tool for Drosophila.
Nucleic Acids Res. 40 (10), 4385-4395, 2012 [PubMed ] [FREE Full Text]

Parul Varma and Rakesh K Mishra.
Dynamics of Nuclear Matrix Proteome during Embryonic Development in Drosophila melanogaster.
J. Biosci. 36 (3), 439-459, 2011. [PubMed ] [FREE Full Text]

Hina Sultana, Shreekant Verma and Rakesh K Mishra.
A BEAF dependent chromatin domain boundary separates myoglianin and eyeless genes of Drosophila melanogaster.
Nucleic Acids Res. 39, 3543-57, 2011 [PubMed ] [FREE Full Text]

Narendra Pratap Singh, Sri Ranganayaki Madabhushi, Surabhi Srivastava, R. Senthilkumar, C. Neeraja, Sanjeev Khosla and Rakesh K Mishra.
Epigenetic profile of the euchromatic region of human Y chromosome.
Nucleic Acids Res. 39, 3594-606, 2011. [PubMed ] [FREE Full Text]

Navneet K Matharu and Rakesh K Mishra.
Tone up your chromatin and stay young.
J. Biosci. 36(1), 5-11, 2011. [PubMed ] [FREE Full Text]

Dasari Vasanthi, Mamidi Anant, Surabhi Srivastava and Rakesh K Mishra.
A functionally conserved boundary element from the mouse HoxD locus requires GAGA factor in Drosophila.
Development 137 (24), 4239-4247, 2010 [PubMed ] [Full Text]

Satish Kallappagoudar, Parul Varma, Rashmi U Pathak, R Senthilkumar and Rakesh K Mishra.
Nuclear matrix proteome analysis of Drosophila melanogaster.
Mol Cell Proteomics 9(9):2005-18, 2010 [PubMed ] [Full Text]

Navneet Kaur Matharu, Tanweer Hussain, Rajan Sankaranarayanan and Rakesh K Mishra.
Vertebrate homologue of Drosophila GAGA factor.
J. Mol. Biol. 400, 437-447, 2010. [PubMed ] [Full Text]

Deepika Puri, Jyotsna Dhawan and Rakesh K Mishra.
The paternal hidden agenda: Epigenetic inheritance through sperm chromatin.
Epigenetics 5, 1-6, 2010. [PubMed ] [Full Text]

Shipra Bhatia, Hema Pawar, Vasanthi Dasari, Rakesh K Mishra, Shanti Chandrashekaran and Vani Brahmachari.
Chromatin remodeling protein INO80 influences expression of homeotic genes in Drosophila.
Genes Cells 15, 725-735, 2010. [PubMed ] [Full Text]

Surabhi Srivastava, Rakesh K Mishra and Jyotsna Dhawan.
Regulation of cellular chromatin state: insight from quiescence and differentiation.
Organogenesis 6, 37-47, 2010. [PubMed ] [FREE Full Text]

Ram Parikshan Kumar, Ramamoorthy Senthilkumar, Vipin Singh and Rakesh K Mishra.
Repeat performance: how do genome packaging and regulation depend on simple sequence repeats?
BioEssays 32, 165-174, 2010. [PubMed ] [Full Text]

Ramamoorthy Senthilkumar and Rakesh K Mishra.
Novel motifs distinguish multiple homologues of Polycomb in vertebrates: expansion and diversification of the epigenetic toolkit.
BMC Genomics 10, 549, 2009. [PubMed ] [FREE Full Text]

L Rao, R Turlapati, M Patel, B Panda, D Tosh, S Mangalipalli, A Tiwari,VP Orunganti, D Rose, A Anand, MK Kulashekaran, SR Priya, Rakesh K Mishra, K Majumdar, RK Aggarwal, L Singh.
Cytogenetic characterization and fluorescence in situ hybridization of (GATA)10 repeats on established primary cell cultures from Indian water snake (Natrix piscator) and Indian mugger (Crocodylus palustris) embryos.
Cytogenet Genome Res. 127, 287-96, 2009. [PubMed ] [Full Text]

Ganiraju Manyam, Ancha Baranova, Mikhail Skoblov and Rakesh K Mishra.
SnS-Align: A graphic tool for alignment of distantly related proteins.
International Journal of Bioinformatics Research & Applications (IJBRA) 5, 663-673, 2009. [PubMed ] [Full Text]

Rakesh K Mishra and Siddhartha Roy.
Chromatin and Disease: Now blame it on Epigenetics.
Current Science (perspective), Current Science 97, 261-262, 2009.

Rakesh K Mishra and Sanjeev Galande.
Divide and (epigenetic) rule: Chromatin Domains as Functional and Structural Units of Genomes (book chapter).
Published by Indian National Academy of Sciences, New Delhi (INSA) platinum jubilee publication, 2009

Narendra Pratap Singh and Rakesh K Mishra.
Differentiation to Dedifferentiation: Induced pluripotent stem cells (book chapter).
Recent Trends in Biotechnology, M P Singh (ed.), Nova Science Publishers, New York, 2009

Krishnaveni Mishra and Rakesh K Mishra.
Polycomb Group of Genes and the Epigenetics of Aging (book chapter).
Epigenetics of Aging, Tollefsbol, Trygve O. (Ed.) Springer (ISBN:978-1-4419-0638-0), 2009, 350 pages. [Link to Table of contents]

Rakesh K Mishra.
Genome to Epigenome (book chapter).
I.K. International Publishing House (ISBN:978-93-80026-21-3), 2009, 222 pages.

Rakesh K Mishra (Editor).
Chromosomes to Genome (book).
I.K. International Publishing House (ISBN:978-93-80026-21-3), 2009, 222 pages.

Narendra Pratap Singh and Rakesh K Mishra.
A double-edged sword to force posterior dominance of Hox genes.
BioEssays 30, 1058-1061, 2008. [PubMed ] [Full Text]

Divya Tej Sowpatia, Devi Thiagarajana, Sudhish Sharmaa, Hina Sultanab, Rosalind Johnc, Azim Surani, Rakesh K Mishra and Sanjeev Khosla.
An intronic DNA sequence within the mouse Neuronatin gene exhibits biochemical characteristics of an ICR and acts as a transcriptional activator in Drosophila.
Mech. Dev. 125, 963-973, 2008. [PubMed ] [Full Text]

Dasari Vasanthi and Rakesh K Mishra.
Epigenetic regulation of genes during development: A conserved theme from flies to mammals.
J. Genet. Genomics 35, 413-429, 2008. [PubMed ] [Full Text]

Vivek S Chopra, Arumugam Srinivasan, Ram P Kumar, Krishnaveni Mishra, Denis Basquin, Mylène Docquier, Carole Seum, Daniel Pauli, Rakesh K Mishra.
Transcriptional activation by GAGA factor is through its direct interaction with dmTAF3.
Dev. Biol. 317, 660-670, 2008. [PubMed ] [Full Text]

Soda Diop, Karine Bertaux, Dasari Vasanthi, Ali Sarkeshik, Benjamin Goirand, Denise Aragnol, Nicholas S. Tolwinski, Michael D. Cole, Jacques Pradel, John R. Yates III, Rakesh K Mishra, Yacine Graba and Andrew J. Saurin.
Reptin and Pontin antagonistically function with PcG and TrxG complexes to mediate Hox gene control.
EMBO Reports 9, 260-266, 2008. [PubMed ] [FREE Full Text]

From 2002-2007
From 1996 - 2001

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