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Publications

From 2001 to November 2011

  1. Parul Varma and Rakesh K Mishra.
    Dynamics of Nuclear Matrix Proteome during Embryonic Development in Drosophila melanogaster.
    J. Biosci. 36 (3), 439-459, 2011. [PubMed ] [FREE Full Text]

  2. Hina Sultana, Shreekant Verma and Rakesh K Mishra.
    A BEAF dependent chromatin domain boundary separates myoglianin and eyeless genes of Drosophila melanogaster.
    Nucleic Acids Res. 39, 3543-57, 2011 [PubMed ] [FREE Full Text]

  3. Narendra Pratap Singh, Sri Ranganayaki Madabhushi, Surabhi Srivastava, R. Senthilkumar, C. Neeraja, Sanjeev Khosla and Rakesh K Mishra.
    Epigenetic profile of the euchromatic region of human Y chromosome.
    Nucleic Acids Res. 39, 3594-606, 2011. [PubMed ] [FREE Full Text]

  4. Navneet K Matharu and Rakesh K Mishra.
    Tone up your chromatin and stay young.
    J. Biosci. 36(1), 5-11, 2011. [PubMed ] [FREE Full Text]

  5. Dasari Vasanthi, Mamidi Anant, Surabhi Srivastava and Rakesh K Mishra.
    A functionally conserved boundary element from the mouse HoxD locus requires GAGA factor in Drosophila.
    Development 137 (24), 4239-4247, 2010 [PubMed ] [Full Text]

  6. Satish Kallappagoudar, Parul Varma, Rashmi U Pathak, R Senthilkumar and Rakesh K Mishra.
    Nuclear matrix proteome analysis of Drosophila melanogaster.
    Mol Cell Proteomics 9(9):2005-18, 2010 [PubMed ] [Full Text]

  7. Navneet Kaur Matharu, Tanweer Hussain, Rajan Sankaranarayanan and Rakesh K Mishra.
    Vertebrate homologue of Drosophila GAGA factor.
    J. Mol. Biol. 400, 437-447, 2010. [PubMed ] [Full Text]

  8. Deepika Puri, Jyotsna Dhawan and Rakesh K Mishra.
    The paternal hidden agenda: Epigenetic inheritance through sperm chromatin.
    Epigenetics 5, 1-6, 2010. [PubMed ] [Full Text]

  9. Shipra Bhatia, Hema Pawar, Vasanthi Dasari, Rakesh K Mishra, Shanti Chandrashekaran and Vani Brahmachari.
    Chromatin remodeling protein INO80 influences expression of homeotic genes in Drosophila.
    Genes Cells 15, 725-735, 2010. [PubMed ] [Full Text]

  10. Surabhi Srivastava, Rakesh K Mishra and Jyotsna Dhawan.
    Regulation of cellular chromatin state: insight from quiescence and differentiation.
    Organogenesis 6, 37-47, 2010. [PubMed ] [FREE Full Text]

  11. Ram Parikshan Kumar, Ramamoorthy Senthilkumar, Vipin Singh and Rakesh K Mishra.
    Repeat performance: how do genome packaging and regulation depend on simple sequence repeats?
    BioEssays 32, 165-174, 2010. [PubMed ] [Full Text]

  12. Ramamoorthy Senthilkumar and Rakesh K Mishra.
    Novel motifs distinguish multiple homologues of Polycomb in vertebrates: expansion and diversification of the epigenetic toolkit.
    BMC Genomics 10, 549, 2009. [PubMed ] [FREE Full Text]

  13. L Rao, R Turlapati, M Patel, B Panda, D Tosh, S Mangalipalli, A Tiwari,VP Orunganti, D Rose, A Anand, MK Kulashekaran, SR Priya, Rakesh K Mishra, K Majumdar, RK Aggarwal, L Singh.
    Cytogenetic characterization and fluorescence in situ hybridization of (GATA)10 repeats on established primary cell cultures from Indian water snake (Natrix piscator) and Indian mugger (Crocodylus palustris) embryos.
    Cytogenet Genome Res. 127, 287-96, 2009. [PubMed ] [Full Text]

  14. Ganiraju Manyam, Ancha Baranova, Mikhail Skoblov and Rakesh K Mishra.
    SnS-Align: A graphic tool for alignment of distantly related proteins.
    International Journal of Bioinformatics Research & Applications (IJBRA) 5, 663-673, 2009. [PubMed ] [Full Text]

  15. Rakesh K Mishra and Siddhartha Roy.
    Chromatin and Disease: Now blame it on Epigenetics.
    Current Science (perspective), Current Science 97, 261-262, 2009.

  16. Rakesh K Mishra and Sanjeev Galande.
    Divide and (epigenetic) rule: Chromatin Domains as Functional and Structural Units of Genomes (book chapter).
    Published by Indian National Academy of Sciences, New Delhi (INSA) platinum jubilee publication, 2009

  17. Narendra Pratap Singh and Rakesh K Mishra.
    Differentiation to Dedifferentiation: Induced pluripotent stem cells (book chapter).
    Recent Trends in Biotechnology, M P Singh (ed.), Nova Science Publishers, New York, 2009

  18. Krishnaveni Mishra and Rakesh K Mishra.
    Polycomb Group of Genes and the Epigenetics of Aging (book chapter).
    Epigenetics of Aging, Tollefsbol, Trygve O. (Ed.) Springer (ISBN:978-1-4419-0638-0), 2009, 350 pages. [Link to Table of contents]

  19. Rakesh K Mishra.
    Genome to Epigenome (book chapter).
    I.K. International Publishing House (ISBN:978-93-80026-21-3), 2009, 222 pages.

  20. Rakesh K Mishra (Editor).
    Chromosomes to Genome (book).
    I.K. International Publishing House (ISBN:978-93-80026-21-3), 2009, 222 pages.

  21. Narendra Pratap Singh and Rakesh K Mishra.
    A double-edged sword to force posterior dominance of Hox genes.
    BioEssays 30, 1058-1061, 2008. [PubMed ] [Full Text]

  22. Divya Tej Sowpatia, Devi Thiagarajana, Sudhish Sharmaa, Hina Sultanab, Rosalind Johnc, Azim Surani, Rakesh K Mishra and Sanjeev Khosla.
    An intronic DNA sequence within the mouse Neuronatin gene exhibits biochemical characteristics of an ICR and acts as a transcriptional activator in Drosophila.
    Mech. Dev. 125, 963-973, 2008. [PubMed ] [Full Text]

  23. Dasari Vasanthi and Rakesh K Mishra.
    Epigenetic regulation of genes during development: A conserved theme from flies to mammals.
    J. Genet. Genomics 35, 413-429, 2008. [PubMed ] [Full Text]

  24. Vivek S Chopra, Arumugam Srinivasan, Ram P Kumar, Krishnaveni Mishra, Denis Basquin, Mylène Docquier, Carole Seum, Daniel Pauli, Rakesh K Mishra.
    Transcriptional activation by GAGA factor is through its direct interaction with dmTAF3.
    Dev. Biol. 317, 660-670, 2008. [PubMed ] [Full Text]

  25. Soda Diop, Karine Bertaux, Dasari Vasanthi, Ali Sarkeshik, Benjamin Goirand, Denise Aragnol, Nicholas S. Tolwinski, Michael D. Cole, Jacques Pradel, John R. Yates III, Rakesh K Mishra, Yacine Graba and Andrew J. Saurin.
    Reptin and Pontin antagonistically function with PcG and TrxG complexes to mediate Hox gene control.
    EMBO Reports 9, 260-266, 2008. [PubMed ] [FREE Full Text]

  26. Hina Iqbal and Rakesh K Mishra.
    Chromatin Domain Boundaries: Defining the functional domains in genome.
    Proc. Ind. Natl. Sci. Acad. 73, 239-253, 2007.

  27. Rakesh K Mishra Takumi Yamagishi, D. Vasanthi, Chiho Ohtsuka and Takashi Kondo.
    Involvement of Polycomb-Group Genes in Establishing HoxD Temporal Colinearity.
    Genesis 45(9), 570-6, 2007. [PubMed ] [Full Text]

  28. Rashmi U. Pathak, Nandini Rangaraj, Satish Kallappagoudar, Krishnaveni Mishra, and Rakesh K Mishra.
    Boundary Element-Associated Factor 32B Connects Chromatin Domains to the Nuclear Matrix.
    Mol. Cell. Biol. 27 (No. 13), 2007. [PubMed ] [FREE Full Text]

  29. Vivek S. Chopra and Rakesh K Mishra.
    MiRacles in Hox gene regulation.
    BioEssays. 28, 445-448, 2006. [PubMed ] [Full Text]

  30. A Blastyak, Rakesh K Mishra, F Karch and H Gyurkovics.
    Efficient and specific targeting of Polycomb group proteins requires cooperative interaction between grainyhead and pleohomeotic.
    Mol. Cell. Biol. 26, 1434-1444, 2006. [PubMed ] [FREE Full Text]

  31. Mohd-Sarip A, Cleard F, Rakesh K Mishra, Karch F, Verrijzer CP.
    Synergistic recognition of an epigenetic DNA element by Pleiohomeotic and a Polycomb core complex.
    Genes Dev. 2005 Aug 1;19(15):1755-60. [PubMed ] [FREE Full Text]

  32. Chopra VS and Rakesh K Mishra.
    To SIR with Polycomb: linking silencing mechanisms.
    Bioessays. 2005 Feb;27(2):119-21. [PubMed ] [Full Text]

  33. S Schweinsberg, K Hagstrom, P Schedl, RP Kumar, Rakesh K Mishra and F Karch.
    The enhancer blocking activity of the Fab-7 boundary from the Drosophila Bithorax Complex requires GAGA factor binding sites.
    Genetics 2004 Nov;168(3):1371-84. [PubMed ] [ FREE Full Text]

  34. Ch Sabarinadh, S Subramanian, A Tripathi and Rakesh K Mishra.
    Extreme Conservation of Non-Repetitive Non-Coding Regions Near HoxD Complex of Vertebrates.
    BMC Genomics. 2004 Oct 6;5(1):75. [PubMed ] [FREE Full Text]

  35. M K Basu and Rakesh K Mishra.
    Bioinformatics and the Art of Sequence Analysis.
    Recent Advances in Biotechnology (N C Gautam and M P Singh, eds), Shree Publishers, New Delhi, PP. 21-41, 2004

  36. K Mishra, V S Chopra, Arumugam Srinivasan and Rakesh K Mishra.
    Trl -GAGA Directly Interacts with lola like and Both are Part of the Repressive Complex of Polycomb Group of Genes.
    Mech. Dev. 120, 681-689, 2003. [PubMed ] [Full Text]

  37. S Subramanian, Rakesh K Mishra and L Singh.
    Genome-Wide Analysis of Bkm Sequences (GATA repeats): Predominant Association with Sex Chromosomes and Potential Role in Higher Order Chromatin Organization and Function (Discovery Note).
    Bioinformatics 19, 681-685, 2003. [PubMed ] [FREE Full Text]

  38. Ch Sabarinadh, S Subramanian and Rakesh K Mishra.
    Extreme Conservation of Non-Repetitive Non-Coding Regions Near HoxD Complex of Vertebrates (Deposited Research Article).
    Genome Biology 4, P2, 2003 [PubMed ] [FREE Full Text]

  39. S Subramanian, Rakesh K Mishra and L Singh.
    Genome-Wide Analysis of Microsatellite Repeats in Humans: Their Abundance and Density in Specific Genomic Regions.
    Genome Biology 4, R13, 2003. [PubMed ] [FREE Full Text]

  40. S Subramanian, V M Madgula, R George, Rakesh K Mishra, M W Pandit, C S Kumar and L Singh.
    Triplet Repeats in Human Genome: Distribution and Their Association with Genes and Other Genomic Regions (Discovery Note).
    Bioinformatics 19, 549-552, 2003. [PubMed ] [FREE Full Text]

  41. S. Subramanian, V M Madgula, R George, Rakesh K Mishra, M W Pandit, C S Kumar and L Singh.
    MRD: a microsatellite repeats database for prokaryotic and eukaryotic genomes (Deposited Research Article).
    Genome Biology 3, 11.1-11.13, 2002. [Abstract] [FREE Full Text]


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