Training on Faster COVID-19 Testing
CSIR - Centre for Cellular & Molecular Biology
Council of Scientific and Industrial Research
Ministry of Science & Technology, Govt. of India
Scientist
Email: tej@ccmb.res.in
Phone: 2960
To be updated...
Selected PublicationsKhan S, Sowpati DT, Srinivasan A, Soujanya M, Mishra RK. Long-Read Genome Sequencing and Assembly of Leptopilina boulardi: A Specialist Drosophila Parasitoid. G3 (Bethesda). 2020 May 4;10(5):1485-1494. doi: 10.1534/g3.120.401151. PMID: 32217632
Avvaru AK, Sharma D, Verma A, Mishra RK, Sowpati DT. MSDB: a comprehensive, annotated database of microsatellites. Nucleic Acids Res. 2020 Jan 8;48(D1):D155-D159. doi: 10.1093/nar/gkz886. PMID: 31599331
Avvaru AK, Sowpati DT, Mishra RK. PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences. Bioinformatics. 2018 Mar 15;34(6):943-948. doi: 10.1093/bioinformatics/btx721. PMID: 29121165.
Sowpati DT, Srivastava S, Dhawan J, Mishra RK. C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search. BMC Bioinformatics. 2017 Sep 13;18(Suppl 10):392. doi:10.1186/s12859-017-1786-6. PMID: 28929968
Sharma G, Sowpati DT, Singh P, Khan MZ, Ganji R, Upadhyay S, Banerjee S, Nandicoori VK, Khosla S. Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection. Sci Rep. 2016 Apr 26;6:25006. doi: 10.1038/srep25006. PMID: 27112593
Education & Experience
| P.G: | Zoology ; Sri Venkateswara University, Tirupati ; 2002 |
| Ph.D: | University of Hyderabad/Centre for DNA Fingerprinting and Diagnostics, Hyderabad ; Biochemistry ; 2012 |
| Post.Doc: | Research Associate ; Indian Institute of Technology, Delhi ; 2012 - 2013 Research Associate, CSIR-CCMB ; 2013 - 2014 ; Project Scientist ; CSIR-CCMB ; 2014 - 2019 |
| Title | Journal | Year |
|---|---|---|
| Long-Read Genome Sequencing and Assembly of Leptopilina boulardi: A Specialist Drosophila Parasitoid. | G3 (Bethesda). 2020 May 4;10(5):1485-1494. doi: 10.1534/g3.120.401151. PMID: 32217632 | 2020 |
| MSDB: a comprehensive, annotated database of microsatellites. | Nucleic Acids Res. 2020 Jan 8;48(D1):D155-D159. doi: 10.1093/nar/gkz886. PMID: 31599331 | 2020 |
| Epigenomic and genomic landscape of Drosophila melanogaster heterochromatic genes. | Genomics. 2019 Mar;111(2):177-185. doi:10.1016/j.ygeno.2018.02.001. Epub 2018 Feb 10. PMID: 29432976. | 2019 |
| The putative Neuronatin imprint control region is an enhancer that also regulates the Blcap gene. | Epigenomics. 2019 Feb;11(3):251-266. doi: 10.2217/epi-2018-0060. Epub 2019 Jan 23. PMID: 30672333. | 2019 |
| Patterns of microsatellite distribution across eukaryotic genomes. | BMC Genomics. 2019 Feb 22;20(1):153. doi: 10.1186/s12864-019-5516-5. PMID: 30795733; | 2019 |
| PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences. | Bioinformatics. 2018 Mar 15;34(6):943-948. doi: 10.1093/bioinformatics/btx721. PMID: 29121165. | 2018 |
| MSDB: A Comprehensive Database of Simple Sequence Repeats. | Genome Biol Evol. 2017 Jun 1;9(6):1797-1802. doi: 10.1093/gbe/evx132. PMID: 28854643; | 2017 |
| C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search. | BMC Bioinformatics. 2017 Sep 13;18(Suppl 10):392. doi:10.1186/s12859-017-1786-6. PMID: 28929968 | 2017 |
| Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection. | Sci Rep. 2016 Apr 26;6:25006. doi: 10.1038/srep25006. PMID: 27112593 | 2016 |
| Single Amino Acid Repeats in the Proteome World: Structural, Functional, and Evolutionary Insights. | PLoS One. 2016 Nov 28;11(11):e0166854. doi: 10.1371/journal.pone.0166854. PMID: 27893794 | 2016 |
| Human mesenchymal stem cells: New sojourn of bacterial pathogens. | Int J Med Microbiol. 2015 May;305(3):322-6. doi: 10.1016/j.ijmm.2015.01.001. Epub 2015 Jan 13. PMID: 25648374. | 2015 |
| Expansion of the polycomb system and evolution of complexity. | Mech Dev. 2015 Nov;138 Pt 2:97-112. doi: 10.1016/j.mod.2015.07.013. Epub 2015 Aug 7. PMID: 26259680. | 2015 |
| Gene cooption in mycobacteria and search for virulence attributes: comparative proteomic analyses of Mycobacterium tuberculosis, Mycobacterium indicus pranii and other mycobacteria. | Int J Med Microbiol. 2014 Jul;304(5-6):742-8. doi: 10.1016/j.ijmm.2014.05.006. Epub 2014 May 29. PMID: 24951307. | 2014 |
| A ChIP- on-chip tiling array approach detects functional histone-free regions associated with boundaries at vertebrate HOX genes. | Genom Data. 2014 May 10;2:78-81. doi: 10.1016/j.gdata.2014.05.001. PMID: 26484075 | 2014 |
| An intronic DNA sequence within the mouse Neuronatin gene exhibits biochemical characteristics of an ICR and acts as a transcriptional activator in Drosophila. | Mech Dev. 2008 Nov-Dec;125(11-12):963-73. doi: 10.1016/j.mod.2008.08.002. Epub 2008 Aug 28. PMID: 18789387. | 2008 |
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