CCMB

CSIR - Centre for Cellular & Molecular Biology

The Innovation Engine of India

G R Chandak

G R Chandak

G R Chandak

J C Bose Fellow
Genomic Research on Complex Diseases
+91-040-27192748
chandakgrc[at]ccmb[dot]res[dot]in

Research Interests

Our group is interested in understanding the genetic basis of complex disorders such as type 2 diabetes mellitus and chronic pancreatitis and its interaction with various environmental factors (epigenetic basis). The major focus is on identifying various genetic and nutritional factors (and interaction between them), which influence The Thin Fat Indian Phenotype, and various intermediate traits that predict higher risk of developing diabetes and metabolic syndrome. These determinants could be both maternal and fetal in origin and we believe that the variable clinical phenotype of these complex disorders in Indians has different genetic basis that is regulated differently and is programmed in-utero (Developmental Origins of Adult Common Diseases,). The larger goal is to have comprehensive knowledge of gene-gene and gene-nutrient interaction that will enable to alleviate and/or modulate the clinical course and complications of these disorders by modification of life style and diet, especially micronutrients.

Selected Publications

C S Yajnik, G R Chandak, C Joglekar, P Katre, D S Bhat, S N Singh, C S Janipalli, H Refsum, G Krishnaveni, S Veena, C Osmond, CHD Fall. Maternal homocysteine in pregnancy and offspring birthweight: Epidemiological associations and Mendelian randomizationanalysis. Int J Epidemiology 22 July 2014. Epub ahead of print. PMID: 25052622.
[Accompanied by Editorial Commentary, Sarah J Lewis (2014). “One-carbon metabolism has major implications for fetal growth and development beyond neural tube defects” Int. J. of Epidemiol., 1-2 doi: 10.1093/ije/dyu175].

Heiko Witt, Sebastian Beer, Jonas Rosendahl, Jian-Min Chen, GirirajRatanChandak, et al. Loss-of-function mutations in CPA1 are strongly associated with early-onset chronic pancreatitis. Nature Genetics 2013 Oct;45(10):1216-20. doi: 10.1038/ng.2730. Epub 2013 Aug 18.

Ganesh Chauhan, Charles J Spurgeon, 12 more authors and G R Chandak (2010). Impact of common variants of PPARG, KCNJ11, TCF7L2, SLC3018, HHEX, CDKN2A, IGF2BP2 AND CDKAL1 on the risk of type 2 diabetes in 5148 Indians. Diabetes ;59(8):2068-74.

P D Gluckman, P Bateson, A S Beedle, Z A Bhutta, M A Hanson, C Law, K V Anokhin, P Bougneres, G R Chandak, P Dasupta, G D Smith, P T Ellison, T Forrester, S F Gilbert, E Jablonka, H Kaplan, A M Prentice, S J Simpson, R Uauy & M J West-Eberhard (2009).”Development and human disease – a synthesis of evolutionary, medical, anthropological, and economic perspectives”. Lancet 373(9675):1654-1657.

G R Chandak, C S Janipalli, S Bhaskar, S R Kulkarni, P Mohankrishna, A T Hattersley, T M Frayling, C S Yajnik (2007). Common variants in the TCF7L2 gene are strongly associated with type 2 diabetes mellitus in the Indian population. Diabetologia50(1):63-67.

[This paper is accompanied by an Editorial Commentary, Zeggini E and McCarthy MI “TCF7L2: the biggest story in diabetes genetics since HLA ?” Diabetologia 50: 1-4.]
DEEP Project Network

Education & Experience

P.G.:

Biochemistry ; Banaras Hindu University ; 1993

Ph.D:

Genetic basis of tropical calcific pancreatitis ; Osmania University ; 2009

Post-doctoral Research:

Disease Genomics ; CSIR-CCMB ; 1994-96

Experience:
  • 2016 onwards Scientist F Centre for Cellular and Molecular Biology, Hyderabad, India
  • 2015-2016 Director(On lien) Centre for DNA Fingerprinting & Diagnostics, Hyderabad, India
  • 2011-2015 Scientist F Centre for Cellular and Molecular Biology, Hyderabad, India
  • 2006-2011 Scientist EII Centre for Cellular and Molecular Biology, Hyderabad, India
  • 2003-2006 Scientist EI (Merit) Centre for Cellular and Molecular Biology, Hyderabad, India
  • 1999-2003 Scientist C Centre for Cellular and Molecular Biology, Hyderabad, India
  • 1996-1999 Scientist III Centre for DNA Fingerprinting & Diagnostics, Hyderabad, India

Team Members

team-members-pic
G R Chandak
G R Chandak

J C Bose Fellow

J C Bose Fellow

P Ashok
P Ashok

Lab Attendant(2)

Lab Attendant(2)

Seema Bhaskar
Seema Bhaskar

Project Manager

Project Manager

Suraj Singh Nongmaithem
Suraj Singh Nongmaithem

Project Scientist-II

Project Scientist-II

Sumit Paliwal
Sumit Paliwal

Project Scientist-II

Project Scientist-II

Sara Sajjadi
Sara Sajjadi

Senior Research Fellow

Senior Research Fellow

Swati Bayyana
Swati Bayyana

Senior Research Fellow

Senior Research Fellow

Alagu Sankareswaran
Alagu Sankareswaran

Senior Project Associate

Senior Project Associate

Sohail Rafik Mansuri
Sohail Rafik Mansuri

Senior Research Fellow(CSIR)

Senior Research Fellow(CSIR)

Manisha Arumalla
Manisha Arumalla

Project Associate - II

Project Associate - II

P S K D B Punya Sri
P S K D B Punya Sri

Project Assistant

Project Assistant

Archana D
Archana D

Project Associate-I

Project Associate-I

Jukanti Akshitha
Jukanti Akshitha

Project Associate-I

Project Associate-I

Dimple Lavanuru
Dimple Lavanuru

Project Associate-I

Project Associate-I

Pranavi Garimella
Pranavi Garimella

Project Assistant

Project Assistant

Patents

Invention

Countries of Filing

Application Number

Publication Number

Status

Grant Number


A kit for detection of mutations causing genetic disorders using unprocessed blood or dried blood spot
India
201911038617
Filed
Under process
A kit for detection of mutations causing genetic disorders using unprocessed blood or dried blood spot
PCT
PCT/IN2020/050189
Filed
Under process

Publications

Title

Journal

Year

Nat Genet. 2022 May;54(5):560-572. doi: 10.1038/s41588-022-01058-3. Epub 2022 May 12.
2022
Commun Biol. 2022 Apr 7;5(1):329. doi: 10.1038/s42003-022-03248-5.
2022
Elife. 2022 Feb 21;11:e72031. doi: 10.7554/eLife.72031.
2022
Epigenomics. 2021 Feb;13(4):257-269. doi: 10.2217/epi-2020-0318. Epub 2021 Jan 20.
2021
Biosens Bioelectron. 2021 Jul 1;183:113207. doi: 10.1016/j.bios.2021.113207. Epub 2021 Apr 5.
2021
Elife. 2021 Apr 20;10:e66537. doi: 10.7554/eLife.66537.
2021
Nature. 2021 Dec;600(7890):675-679. doi: 10.1038/s41586-021-04064-3. Epub 2021 Dec 9.
2021
PLoS One. 2020 Jan 29;15(1):e0228269. doi: 10.1371/journal.pone.0228269. eCollection 2020.
2020
Mol Cell Biochem. 2020 May;468(1-2):83-96. doi: 10.1007/s11010-020-03713-x. Epub 2020 Mar 18.
2020
Mitochondrion. 2020 Jul;53:91-98. doi: 10.1016/j.mito.2020.04.009. Epub 2020 May 4.
2020
Am J Gastroenterol. 2019 Jun;114(6):974-983. doi: 10.14309/ajg.0000000000000051.
2019
BMC Pregnancy Childbirth. 2019 Aug 23;19(1):308. doi: 10.1186/s12884-019-2450-0.
2019
Nat Commun. 2019 Oct 31;10(1):4957. doi: 10.1038/s41467-019-12283-6.
2019
Epigenomics. 2018 Jan;10(1):71-90. doi: 10.2217/epi-2017-0102. Epub 2017 Nov 14.
2018
Sci Data. 2018 Jan 23;5:180002. doi: 10.1038/sdata.2018.2.
2018
Epigenomics. 2018 May;10(5):613-627. doi: 10.2217/epi-2017-0139. Epub 2018 Mar 27.
2018
Blood Cells Mol Dis. 2018 Nov;73:14-21. doi: 10.1016/j.bcmd.2018.08.003. Epub 2018 Aug 27.
2018
Epigenomics. 2017 Jul;9(7):985-996. doi: 10.2217/epi-2016-0173. Epub 2017 Jun 15.
2017
Sci Data. 2017 Dec 19;4:170179. doi: 10.1038/sdata.2017.179.
2017
Int J Obes (Lond). 2016 Apr;40(4):725-6. doi: 10.1038/ijo.2016.15. Epub 2016 Feb 23.
2016
Gastroenterology. 2016 Jun;150(7):1558-1560.e5. doi: 10.1053/j.gastro.2016.02.071. Epub 2016 Mar 3.
2016
Nature. 2016 Aug 4;536(7614):41-47. doi: 10.1038/nature18642. Epub 2016 Jul 11.
2016
Indian J Nephrol. 2016 Nov-Dec;26(6):434-445. doi: 10.4103/0971-4065.176144.
2016
Nature. 2015 Feb 12;518(7538):187-196. doi: 10.1038/nature14132.
2015
Nature. 2015 Feb 12;518(7538):197-206. doi: 10.1038/nature14177.
2015
J Proteomics. 2015 Sep 8;127(Pt A):178-84. doi: 10.1016/j.jprot.2015.04.035. Epub 2015 May 14.
2015
Nature. 2015 Jul 23;523(7561):459-462. doi: 10.1038/nature14618. Epub 2015 Jul 1.
2015
Front Genet. 2015 Aug 7;6:251. doi: 10.3389/fgene.2015.00251. eCollection 2015.
2015
Curr Obes Rep. 2015 Dec;4(4):418-28. doi: 10.1007/s13679-015-0175-6.
2015
Clin Endocrinol (Oxf). 2014 Nov;81(5):702-10. doi: 10.1111/cen.12428. Epub 2014 Mar 13.
2014
Metabolism. 2014 May;63(5):633-9. doi: 10.1016/j.metabol.2014.02.008. Epub 2014 Feb 17.
2014
Reprod Sci. 2014 Dec;21(12):1508-17. doi: 10.1177/1933719114532838. Epub 2014 May 6.
2014
PLoS One. 2014 Jul 3;9(7):e101688. doi: 10.1371/journal.pone.0101688. eCollection 2014.
2014
Int J Epidemiol. 2014 Oct;43(5):1487-97. doi: 10.1093/ije/dyu132. Epub 2014 Jul 22.
2014
World J Gastroenterol. 2014 Dec 14;20(46):17314-23. doi: 10.3748/wjg.v20.i46.17314.
2014
Gut. 2013 Nov;62(11):1602-6. doi: 10.1136/gutjnl-2012-302448. Epub 2012 May 12.
2013
J Nutr Biochem. 2013 Jan;24(1):25-31. doi: 10.1016/j.jnutbio.2012.01.004. Epub 2012 Jun 14.
2013
PLoS One. 2013;8(1):e53944. doi: 10.1371/journal.pone.0053944. Epub 2013 Jan 17.
2013
PLoS One. 2013;8(2):e56472. doi: 10.1371/journal.pone.0056472. Epub 2013 Feb 12.
2013
PLoS One. 2013;8(3):e59584. doi: 10.1371/journal.pone.0059584. Epub 2013 Mar 18.
2013
J Proteomics. 2013 Oct 8;91:297-308. doi: 10.1016/j.jprot.2013.07.027. Epub 2013 Aug 6.
2013
Nat Genet. 2013 Oct;45(10):1216-20. doi: 10.1038/ng.2730. Epub 2013 Aug 18.
2013
Diabetologia. 2012 Feb;55(2):349-57. doi: 10.1007/s00125-011-2355-6. Epub 2011 Nov 4.
2012
Diabetologia. 2012 Apr;55(4):981-95. doi: 10.1007/s00125-011-2370-7. Epub 2011 Nov 23.
2012
J Hum Genet. 2012 Mar;57(3):184-90. doi: 10.1038/jhg.2011.150. Epub 2012 Jan 26.
2012
PLoS One. 2012;7(2):e31621. doi: 10.1371/journal.pone.0031621. Epub 2012 Feb 15.
2012
J Clin Endocrinol Metab. 2012 Sep;97(9):E1820-4. doi: 10.1210/jc.2012-1328. Epub 2012 Jun 20.
2012
Diabetologia. 2012 Oct;55(10):2660-2666. doi: 10.1007/s00125-012-2655-5. Epub 2012 Aug 7.
2012
J Genet. 2012 Aug;91(2):229-32. doi: 10.1007/s12041-012-0163-5.
2012
PLoS One. 2012;7(9):e46153. doi: 10.1371/journal.pone.0046153. Epub 2012 Sep 28.
2012
PLoS One. 2012;7(9):e45731. doi: 10.1371/journal.pone.0045731. Epub 2012 Sep 25.
2012
Lipids Health Dis. 2012 Nov 14;11:155. doi: 10.1186/1476-511X-11-155.
2012
Gut. 2011 Oct;60(10):1440-1; author reply 1441-2. doi: 10.1136/gut.2010.228452. Epub 2010 Oct 27.
2012
J Gastroenterol Hepatol. 2011 Apr;26(4):694-9. doi: 10.1111/j.1440-1746.2010.06533.x.
2011
Genet Test Mol Biomarkers. 2011 Jul-Aug;15(7-8):507-12. doi: 10.1089/gtmb.2010.0207. Epub 2011 Mar 25.
2011
J Proteomics. 2011 Sep 6;74(10):1918-25. doi: 10.1016/j.jprot.2011.05.002. Epub 2011 May 11.
2011
Eur J Hum Genet. 2011 Oct;19(10):1066-73. doi: 10.1038/ejhg.2011.79. Epub 2011 May 25.
2011
Haemophilia. 2011 Sep;17(5):e928-35. doi: 10.1111/j.1365-2516.2011.02584.x. Epub 2011 Jun 22.
2011
Birth Defects Res A Clin Mol Teratol. 2011 Sep;91(9):848-56. doi: 10.1002/bdra.20841. Epub 2011 Jul 18.
2011
Indian J Gastroenterol. 2011 Jul;30(4):154-5. doi: 10.1007/s12664-011-0119-3. Epub 2011 Aug 17.
2011
Nature. 2011 Sep 11;478(7367):103-9. doi: 10.1038/nature10405.
2011
Nat Genet. 2011 Oct 16;43(11):1131-8. doi: 10.1038/ng.970.
2011
J Trop Pediatr. 2010 Aug;56(4):284-5. doi: 10.1093/tropej/fmp108. Epub 2009 Nov 24.
2010
Indian J Otolaryngol Head Neck Surg. 2010 Jan;62(1):60-3. doi: 10.1007/s12070-010-0009-5. Epub 2010 Jun 4.
2010
Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):18961-6. doi: 10.1073/pnas.1006108107. Epub 2010 Oct 18.
2010
Diabetologia. 2009 Feb;52(2):247-52. doi: 10.1007/s00125-008-1186-6. Epub 2008 Nov 13.
2009
World J Gastroenterol. 2009 Jan 21;15(3):264-9. doi: 10.3748/wjg.15.264.
2009
Lancet. 2009 May 9;373(9675):1654-7. doi: 10.1016/S0140-6736(09)60234-8.
2009
Clin Gastroenterol Hepatol. 2008 Jan;6(1):82-8. doi: 10.1016/j.cgh.2007.10.004. Epub 2007 Dec 11.
2008
J Trop Pediatr. 2008 Oct;54(5):328-32. doi: 10.1093/tropej/fmn031. Epub 2008 May 8.
2008
J Genet. 2008 Apr;87(1):3-20. doi: 10.1007/s12041-008-0002-x.
2008
Diabetologia. 2007 Jan;50(1):63-7. doi: 10.1007/s00125-006-0502-2. Epub 2006 Nov 9.
2008
World J Gastroenterol. 2007 Jun 7;13(21):2956-9. doi: 10.3748/wjg.v13.i21.2956.
2007
World J Gastroenterol. 2007 Nov 28;13(44):5938-43. doi: 10.3748/wjg.v13.i44.5938.
2007
Haematologica. 2007 Dec;92(12):1725-6. doi: 10.3324/haematol.11545.
2007
Gut. 2006 Sep;55(9):1270-5. doi: 10.1136/gut.2005.087403. Epub 2006 Feb 21.
2006
J Pediatr Endocrinol Metab. 2006 Jul;19(7):947-50. doi: 10.1515/jpem.2006.19.7.947.
2006
BMC Med Genet. 2006 Sep 30;7:73. doi: 10.1186/1471-2350-7-73.
2006
Gut. 2005 May;54(5):728-9. doi: 10.1136/gut.2004.055335.
2005
Exp Mol Med. 2005 Jun 30;37(3):147-54. doi: 10.1038/emm.2005.20.
2005
Hum Biol. 2002 Oct;74(5):683-93. doi: 10.1353/hub.2002.0051.
2002
J Pediatr Surg. 1999 Apr;34(4):641-4. doi: 10.1016/s0022-3468(99)90095-7.
1999

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